PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0021700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 390aa    MW: 44074.8 Da    PI: 10.0011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0021700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-0877106230
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPk.a 30 
                      r++h  +Er+RR+++N+ ++ L++l+P   
  Spipo14G0021700  77 RMSHITVERNRRKQMNEHLSVLKSLMPCfY 106
                      89*************************844 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.91E-874109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.08675145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-776106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-677106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-577109No hitNo description
SuperFamilySSF889462.98E-30109223IPR013325RNA polymerase sigma factor, region 2
Gene3DG3DSA:1.10.10.101.0E-4113144IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.601.102.1E-27145223No hitNo description
TIGRFAMsTIGR029372.1E-24152377IPR014284RNA polymerase sigma-70 like domain
PfamPF045422.4E-12156222IPR007627RNA polymerase sigma-70 region 2
PRINTSPR000469.4E-14183196IPR000943RNA polymerase sigma-70
PRINTSPR000469.4E-14207215IPR000943RNA polymerase sigma-70
Gene3DG3DSA:1.10.10.106.1E-9230280IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF886595.67E-9231295IPR013324RNA polymerase sigma factor, region 3/4
PfamPF045393.5E-14240304IPR007624RNA polymerase sigma-70 region 3
SuperFamilySSF886598.04E-18315387IPR013324RNA polymerase sigma factor, region 3/4
Gene3DG3DSA:1.10.10.104.1E-21320388IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF045456.6E-14324377IPR007630RNA polymerase sigma-70 region 4
PRINTSPR000469.4E-14328340IPR000943RNA polymerase sigma-70
PRINTSPR000469.4E-14349364IPR000943RNA polymerase sigma-70
PRINTSPR000469.4E-14364375IPR000943RNA polymerase sigma-70
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0009658Biological Processchloroplast organization
GO:0010114Biological Processresponse to red light
GO:0010207Biological Processphotosystem II assembly
GO:0010218Biological Processresponse to far red light
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071483Biological Processcellular response to blue light
GO:0005739Cellular Componentmitochondrion
GO:0009507Cellular Componentchloroplast
GO:0001053Molecular Functionplastid sigma factor activity
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDDSQALSDL FDGSENLFSM LESLEDPRGS LLSPLEEVFS PRGSSTAELE APASRKRMRM  60
GEYAAAAVAV AGEGQVRMSH ITVERNRRKQ MNEHLSVLKS LMPCFYVKRA TLAVKDTLCV  120
DLGREPTDGE LASAINMNVQ QLRRHLEVGH AARNKLIKHN LRLVLFAINK YYHEIANGQK  180
FQDLCQAGVK GLITAIDRFE PKRGFRLSTY ALFWIRHAII RSMTISSFAR VPFGIESVRQ  240
EIQRAKLELT FELKREPTEE EIVSRVGISP DRYNDVLRAS KPVISLNARH ATTQEEFIKG  300
IADVDSVGDR RRQPALLRLA LDDVLDSLKP KESLVIRQRY GLDGKGDRTL GEIAGNLNIS  360
REMVRKHEVK ALMKLKHPAR VDYLRRYIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3iyd_F3e-37138388357611RNA polymerase sigma factor rpoD
4ljz_F2e-37138388266520RNA polymerase sigma factor RpoD
4ljz_L2e-37138388266520RNA polymerase sigma factor RpoD
4lk0_F2e-37138388266520RNA polymerase sigma factor RpoD
4lk0_L2e-37138388266520RNA polymerase sigma factor RpoD
4xsx_F2e-37138388266520RNA polymerase sigma factor RpoD
4xsx_L2e-37138388266520RNA polymerase sigma factor RpoD
4xsy_F2e-37138388266520RNA polymerase sigma factor RpoD
4xsy_L2e-37138388266520RNA polymerase sigma factor RpoD
4xsz_F2e-37138388266520RNA polymerase sigma factor RpoD
4xsz_L2e-37138388266520RNA polymerase sigma factor RpoD
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17687RMSHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410848.11e-166PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
SwissprotQ9ZNX91e-155SIGE_ARATH; RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
TrEMBLM0TKE51e-166M0TKE5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P24590_0011e-165(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-16bHLH family protein